Results

All cells

single cell

sample level

## Warning: Removed 5011 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 1253 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

major cell type level

## Warning: Removed 5011 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 1253 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

cell subtype level

## Warning: Removed 5647 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 220 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 5032 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 919 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6052 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 432 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 5116 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 1290 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6927 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 40 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 7121 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 1 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 5678 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 778 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 7036 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 24 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 4541 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 203 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6324 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 12 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

Pseudobulk

sample level

## Warning: Removed 147 rows containing missing values (`geom_point()`).
## Warning: Removed 9876 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 430 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

major cell type level

## Warning: Removed 147 rows containing missing values (`geom_point()`).
## Warning: Removed 9876 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 430 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

cell subtype level

## Warning: Removed 2414 rows containing missing values (`geom_point()`).
## Warning: Removed 10263 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 19 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 9118 rows containing missing values (`geom_point()`).
## Warning: Removed 10219 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 1677 rows containing missing values (`geom_point()`).
## Warning: Removed 10172 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 112 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 7 rows containing missing values (`geom_point()`).
## Warning: Removed 10108 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 8677 rows containing missing values (`geom_point()`).
## Warning: Removed 10157 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 9158 rows containing missing values (`geom_point()`).
## Warning: Removed 10263 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 114 rows containing missing values (`geom_point()`).
## Warning: Removed 10074 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 229 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 5795 rows containing missing values (`geom_point()`).
## Warning: Removed 10249 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 46 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 9334 rows containing missing values (`geom_point()`).
## Warning: Removed 10223 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 12 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 7975 rows containing missing values (`geom_point()`).
## Warning: Removed 10266 rows containing missing values (`geom_text_repel()`).

CAR+ cells

single cell

sample level

## Warning: Removed 5354 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 1129 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

major cell type level

## Warning: Removed 5354 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 1129 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

cell subtype level

## Warning: Removed 5642 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 904 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6639 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 154 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6215 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 550 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6627 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 165 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 7461 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 5015 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 31 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 7465 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 6867 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 7283 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 18 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 8164 rows containing missing values (`geom_text_repel()`).

Pseudobulk

sample level

## Warning: Removed 114 rows containing missing values (`geom_point()`).
## Warning: Removed 8752 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 329 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

major cell type level

## Warning: Removed 114 rows containing missing values (`geom_point()`).
## Warning: Removed 8752 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 329 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

cell subtype level

## Warning: Removed 2478 rows containing missing values (`geom_point()`).
## Warning: Removed 9056 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 8 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 7 rows containing missing values (`geom_point()`).
## Warning: Removed 8781 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 1824 rows containing missing values (`geom_point()`).
## Warning: Removed 9029 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 49 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 3 rows containing missing values (`geom_point()`).
## Warning: Removed 8733 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 8 rows containing missing values (`geom_point()`).
## Warning: Removed 8910 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 10 rows containing missing values (`geom_point()`).
## Warning: Removed 8983 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 81 rows containing missing values (`geom_point()`).
## Warning: Removed 9026 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 58 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 6330 rows containing missing values (`geom_point()`).
## Warning: Removed 9038 rows containing missing values (`geom_text_repel()`).
## Warning: ggrepel: 17 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
## Warning: Removed 5507 rows containing missing values (`geom_point()`).
## Warning: Removed 8877 rows containing missing values (`geom_text_repel()`).
## Warning: Removed 11 rows containing missing values (`geom_point()`).
## Warning: Removed 8868 rows containing missing values (`geom_text_repel()`).